scFates.tl.attach_tree

scFates.tl.attach_tree(adata, adata_branch, linkage=None)

Attach a tree to another!

Given that the datasets were initially processed together.

Parameters:

adata AnnData

Annotated data matrix.

adata_branch AnnData

Annotated data matrix containing cells and tree to attach to the adata.

linkage Optional[tuple] (default: None)

Force the attachment of the two tree between two respective milestones (main tree, branch), the adjacency matrix will not be updated.

Returns:

adata : anndata.AnnData combined dataset with the following merged tree fields:

.uns[‘graph’][‘B’]

merged adjacency matrix of the principal points.

.uns[‘graph’][‘R’]

merged updated soft assignment of cells to principal point in representation space.

.uns[‘graph’][‘F’]

merged coordinates of principal points in representation space.