scFates.tl.slide_cors¶
- scFates.tl.slide_cors(adata, root_milestone, milestones, genesetA=None, genesetB=None, perm=False, layer=None, copy=False)¶
Obtain gene module correlations in the non-intersecting windows along pseudotime.
- Parameters
- adata :
AnnData Annotated data matrix.
- root_milestone
tip defining progenitor branch.
- milestones :
List tips defining the progenies branches.
- layer :
str|NoneOptional[str] (default:None) adata layer from which to compute the correlations.
- copy :
bool(default:False) Return a copy instead of writing to adata.
- adata :
- Returns
adata – if copy=True it returns subsetted or else subset (keeping only significant features) and add fields to adata:
- .uns[‘root_milestone->milestoneA<>milestoneB’][‘corAB’]
Dataframe containing gene-gene correlation modules.
- Return type