scFates.tl.synchro_path_multi¶
- scFates.tl.synchro_path_multi(adata, root_milestone, milestones, copy=False, **kwargs)¶
Wrappers that call tl.synchro_path on the pairwise combination of all selected branches.
- Parameters
- adata :
AnnData Annotated data matrix.
- root_milestone
tip defining progenitor branch.
- milestones
tips defining the progenies branches.
- kwargs
arguments to pass to tl.synchro_path.
- adata :
- Returns
adata – if copy=True it returns subsetted or else subset (keeping only significant features) and add fields to adata:
- .uns[‘root_milestone->milestoneA<>milestoneB’][‘synchro’]
Dataframe containing mean local gene-gene correlations of all possible gene pairs inside one module, or between the two modules.
- .obs[‘intercor root_milestone->milestoneA<>milestoneB’]
loess fit of inter-module mean local gene-gene correlations prior to bifurcation
- Return type