scFates.pl.graph¶
- scFates.pl.graph(adata, basis=None, size_nodes=None, alpha_nodes=1, linewidth=2, alpha_seg=1, color_cells=None, tips=True, forks=True, nodes=[], ax=None, show=None, save=None, **kwargs)¶
Project principal graph onto embedding.
- Parameters
- adata :
AnnData Annotated data matrix.
- basis :
str|NoneOptional[str] (default:None) Name of the obsm basis to use.
- size_nodes :
float|NoneOptional[float] (default:None) Size of the projected prinicpal points.
- alpha_nodes :
float(default:1) Alpha of nodes.
- linewidth :
float(default:2) Line width of the segments.
- alpha_seg :
float(default:1) Alpha of segments.
- color_cells :
str|NoneOptional[str] (default:None) cells color
- tips :
bool(default:True) display tip ids.
- forks :
bool(default:True) display fork ids.
- nodes :
List|NoneOptional[List] (default:[]) display any node id.
- ax
Add plot to existing ax
- show :
bool|NoneOptional[bool] (default:None) show the plot.
- save :
str|bool|NoneUnion[str,bool,None] (default:None) save the plot.
- kwargs
arguments to pass to
scanpy.pl.embedding()
- adata :
- Returns
- Return type
If show==False a
Axes