scFates.pl.synchro_path¶
- scFates.pl.synchro_path(adata, root_milestone, milestones, knots=10, alpha_multi=0.1, knots_multi=None, max_t=None, figsize=None, show=None, save=None)¶
Plot results generated from tl.synchro_path.
- Parameters
- adata :
AnnData Annotated data matrix.
- root_milestone
tip defining progenitor branch.
- milestones
tips defining the progenies branches.
- knots :
int(default:10) number of knots for gamfit.
- alpha_multi :
float(default:0.1) alpha multiple mapping.
- knots_multi :
int|NoneOptional[int] (default:None) knots for overall mappings (plot disabled if not set).
- max_t :
float|NoneOptional[float] (default:None) set max pseudotime to show.
- figsize :
None|tupleOptional[tuple] (default:None) figure size.
- show :
bool|NoneOptional[bool] (default:None) show the plot.
- save :
str|bool|NoneUnion[str,bool,None] (default:None) save the plot.
- adata :
- Returns
- Return type
If show==False a matrix of
Axes