scFates.pl.synchro_path

scFates.pl.synchro_path(adata, root_milestone, milestones, knots=10, alpha_multi=0.1, knots_multi=None, max_t=None, figsize=None, show=None, save=None)

Plot results generated from tl.synchro_path.

Parameters:

adata AnnData

Annotated data matrix.

root_milestone

tip defining progenitor branch.

milestones

tips defining the progenies branches.

knots int (default: 10)

number of knots for gamfit.

alpha_multi float (default: 0.1)

alpha multiple mapping.

knots_multi Optional[int] (default: None)

knots for overall mappings (plot disabled if not set).

max_t Optional[float] (default: None)

set max pseudotime to show.

figsize Optional[tuple] (default: None)

figure size.

show Optional[bool] (default: None)

show the plot.

save Union[str, bool, None] (default: None)

save the plot.

Returns:

If show==False a matrix of Axes