scFates.pl.module_inclusion¶
- scFates.pl.module_inclusion(adata, root_milestone, milestones, bins, branch, feature=None, figsize=(6, 5), max_t='max', perm=False, show=None, save=None)¶
Plot results generated from tl.module_inclusion.
- Parameters
- adata
Annotated data matrix.
- root_milestone
tip defining progenitor branch.
- milestones
tips defining the progenies branches.
- bins :
int Number of bins to separate the pseudotime path.
- branch :
str Which endpoint to focus on.
- feature :
str|NoneOptional[str] (default:None) Plot a specific feature.
- figsize :
tuple(default:(6, 5)) Size of the figure.
- max_t : {‘fork’, ‘max’}
Literal[‘fork’, ‘max’] (default:'max') Until which pseudotime to limit the plot and binning.
- perm :
bool(default:False) Show permutation results.
- show :
bool|NoneOptional[bool] (default:None) show the plot.
- save :
str|bool|NoneUnion[str,bool,None] (default:None) save the plot.
- Returns
- Return type
If show==False a matrix of
Axes