scFates.pl.module_inclusion

scFates.pl.module_inclusion(adata, root_milestone, milestones, bins, branch, feature=None, figsize=(6, 5), max_t='max', perm=False, show=None, save=None)

Plot results generated from tl.module_inclusion.

Parameters:

adata

Annotated data matrix.

root_milestone

tip defining progenitor branch.

milestones

tips defining the progenies branches.

bins int

Number of bins to separate the pseudotime path.

branch str

Which endpoint to focus on.

feature Optional[str] (default: None)

Plot a specific feature.

figsize tuple (default: (6, 5))

Size of the figure.

max_t Literal['fork', 'max'] (default: 'max')

Until which pseudotime to limit the plot and binning.

perm bool (default: False)

Show permutation results.

show Optional[bool] (default: None)

show the plot.

save Union[str, bool, None] (default: None)

save the plot.

Returns:

If show==False a matrix of Axes