scFates.get.fork_stats

scFates.get.fork_stats(adata, root_milestone, milestones, module=None, branch=None)

Extract statistics from the fork analysis.

Parameters:

adata AnnData

Annotated data matrix.

root_milestone str

tip defining progenitor branch.

milestones Iterable

tips defining the progenies branches.

module Optional[str] (default: None)

subset features to a specific module.

branch Optional[str] (default: None)

subset features to a specific milestone.

Returns:

a pandas.DataFrame extracted from adata.uns.