scFates.get.slide_cors

scFates.get.slide_cors(adata, root_milestone, milestones, branch, geneset_branch)

Extract statistics from the sliding window correlation analysis.

Parameters:

adata AnnData

Annotated data matrix.

root_milestone str

tip defining progenitor branch.

milestones Iterable

tips defining the progenies branches.

branch str

subset features to a specific milestone.

geneset_branch str

which geneset to show correlations.

Returns:

a pandas.DataFrame extracted from adata.uns.