scFates.get.slide_cors

scFates.get.slide_cors(adata, root_milestone, milestones, branch, geneset_branch)

Extract statistics from the sliding window correlation analysis.

Parameters

adata : AnnData

Annotated data matrix.

root_milestone : str

tip defining progenitor branch.

milestones : Iterable

tips defining the progenies branches.

branch : str

subset features to a specific milestone.

geneset_branch : str

which geneset to show correlations.

Returns

Return type

a pandas.DataFrame extracted from adata.uns.