scFates.get.modules¶
- scFates.get.modules(adata, root_milestone, milestones, layer=None, module='all')¶
Extract mean expression of identified early and late modules.
- Parameters
- adata :
AnnData Annotated data matrix.
- root_milestone :
str tip defining progenitor branch.
- milestones :
Iterable tips defining the progenies branches.
- layer :
str|NoneOptional[str] (default:None) layer to use to calculate the mean.
- module : {‘early’, ‘late’, ‘all’}
Literal[‘early’, ‘late’, ‘all’] (default:'all') extract either the early, late or both modules.
- adata :
- Returns
- Return type
a
pandas.DataFrame.